Tsjerk Wassenaar wrote:
Vladimir,
The default "--prefix" is /usr/local. You're not allowed to write
there as user, that's why that failed. So it did succeed as root; root
is allowed to write there. I suggest installing as user, with
./configure --prefix=/home/vladimir/gmx331 and whatever other options
you need. Check ./configure --help
Yes... Vladimir appears to be confusing doing the build from
/home/vladimir/gmx331 with the destination for that build... which is
under /usr/local unless you actually specific differently to configure.
Vladimir, somewhere there are instructions about including "sourcing"
GMXRC in your .bashrc or .cshrc files. Until you've done this, the
gromacs binaries won't be on your PATH. The good thing about using
configure, is that GMXRC will point to the right things irrespective of
the inputs to configure... this beats doing it by hand when you go to
change things later on!
Mark
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