Hi,
Thanks, But is it possible to get the corresponding PDB format of
that molcule from pymol after drawing it? Basically, I installed the
pymol. But I could not find an option for writing the corresponding
PDB structure of the entire molecule
Jagannath
On Mar 29, 2007, at 2:07 PM, Jay Mashl wrote:
PyMOL (http://pymol.sf.net) is one option for building the chain
based on natural amino acids and subsequently performing mutations.
Jay
On Wed, 28 Mar 2007, Jagannath Mondal wrote:
Date: Wed, 28 Mar 2007 23:54:27 -0500
From: Jagannath Mondal <[EMAIL PROTECTED]>
Reply-To: Discussion list for GROMACS users <gmx-users@gromacs.org>
To: Discussion list for GROMACS users <gmx-users@gromacs.org>
Subject: [gmx-users] query about making a pdb file Hi all,
I am a gromacs beginner. I am dealing with a 10-residue molecule
each of which is un-natural amino acid called beta-peptide. I was
wondering whether there is any option of making a PDB file so that
I can use it to prepare the corresponding .gro file in gromacs. I
somehow could generate the cartesian coordinates of the molecule.
At least, can you suggest some software which are free and have
mac-version so that I can generate the coresponding PDB file of
the molecule from the cartesian coordinates.
Thanks,
Jagannath Mondal
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