Hi,
I am trying to learn how to use implicit solvent model for PMF
calculation. For that ,I wanted to know what are the options for
implicit solvent present in gromacs. But I could not find any
documentation regarding that. I searched mailing list and found that
there has been some query on the documentation but I could not find
any suitable reply. In one of the reply, David suggested using
following command:
touch grompp
grompp
But it does not show all the available option for implicit
solvent model gromacs has got. it shows implicit solvent= no.
There were some older mail (before 2006) where it was said that
gromacs has not gor implicit solvent model. But I hope that latest
version has got implicit solvent model. Can anyone suggest any
documentation where I can find the availble options for implicit
solvent model as well as the other options for Generalized Born model?
Thanks in advance,,
Yours sincerely,
Jagannath Mondal
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