toma0052 wrote:
Source files aren't installed anywhere by default, they get left where they are. Thus it seems your installation directory was cleaned away, if your search was complete.

Thank you for the response.  That seems to be the case.  If I were to
re-install Gromacs again, what should I do so that the installation directory
and hence source files are not cleaned away?  Last time I followed the
instructions from the post: [gmx-users] HOWTO for installing non-MPI
gromacs-3.3.1 on cygwin.
What additional would I need to do to keep the source files?

You'd need to not clean them away. That HOWTO I wrote is silent about what to do with your installation directory that includes the source. You may as well leave it (having possibly done "make clean" to get rid of useless object files, unless you're planning rebuilds). Or you can unpack the source again and put it anywhere that strikes your fancy. There's not many rules for Cygwin, especially not for things that don't have to interact with anything else, such as a passive source distribution.

Mark
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