My xtc file is smaller than 1 GB. When I use it as input in programs such as g_order, g_potential, etc it has been getting the same problem. The computer that I've been using is a workstation with 2 Dual-Core processors.
Cheers, Chris. --- Chris Neale <[EMAIL PROTECTED]> escreveu: > >Program trjconv, VERSION 3.3.1 > >Source code file: xtcio.c, line: 83 > >Fatal error: > >Magic Number Error in XTC file (read 0, should be > >1995). > > If you are talking about trjconv -e while searching > more than 2Gb into the file then it is a known issue > > (see bug #126 > http://www.gromacs.org/component/option,com_wrapper/Itemid,157/) > and is fixed in CVS but not > in the standard downloadable versions yet (to > 3.3.1). > > If you are talking about a different case, please > send lots more data (but do a search first please). > I have experienced such problems but that has > something to do with our cluster and not gromacs. > For us, different clusters work fine for gromacs but > it is only gromacs that has this problem on the > problematic cluster. > Our problem is definately due to an overloaded NFS > server and we appear to have solved the problem by > writing > to /scratch (local node space) during the run. We > are still looking into the issue but it may be a > problem of > NFS delay and not NFS corruption and then the > corruption occurs when we try to trjconv or gmxcheck > a file > that is not yet completely written. > > Chris. > > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the > list. Use the > www interface or send it to > [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > ____________________________________________________________________________________ Novo Yahoo! Cadê? - Experimente uma nova busca. http://yahoo.com.br/oqueeuganhocomisso _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
