Using "trjconv -ur compact -pbc atom" worked. JW
On 10/9/07, JW Feng <[EMAIL PROTECTED]> wrote: > GMX users, > > In 3.3.1, I used "trjconv -ur compact -pbc whole " to convert a > rhombic dodecahedron box so it could be displayed properly in VMD. > This does not appear to be working in 3.3.2. Is there another way to > convert a box so it displays properly in a visualization program? > > This is the command that I used, > " echo 0 | trjconv -ur compact -pbc whole -f 1fsv_heat300.gro -s > 1fsv_heat300.gro -o 1fsv_heat300_visual.gro" > > Thanks, > > JW > > -- > Jianwen A Feng > Center for Computational Biology > Washington University in St. Louis > -- Jianwen A Feng Center for Computational Biology Washington University in St. Louis _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php