tangxuan wrote:
Dear all,
I have got a pdb file by command g_rmsf and option -oq, and the content
of the file is like this:
Could you tell me which column should be the b-factor?
Google is your friend :-) Try "pdb file format"
B-factor is the
thermal deviation of the atom, and could you tell me how the gromacs
gives the values of b-factor for each atom in detail?
If you want to know what GROMACS does in detail, that's why the authors
gave you the source code. There might be a literature source there, but
I think this is more like textbook material, e.g. google "definition
crystallographic b-factor"
Mark
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