On Mon, Oct 29, 2007 at 09:54:08AM +0100, David van der Spoel wrote: > Marc F. Lensink wrote: > >On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote: > >>Anupam Nath Jha wrote: > >>>Dear all > >>>can i calculate the angle between trans-membrane alpha-helices by using > >>>gromacs? > >>Probably. Check out section 7.4 of the manual. > > > >i wrote a program for that. contact me off-list. > > > >as soon as i find a free moment, i'll upload it to the contrib page. > > > otherwise g_bundle might do it
yes, i should perhaps mention that my program calculates the helix axes, using some rotational fit. but for TM helices, that stay helix anyway, this is not such a relevant feature. cheers, marc _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
