it seems there's a problem with my compiler. I succesfully run grompp in another computer with gromacs distribution. I compare and check the two ggc version.
On Nov 9, 2007 7:10 PM, Mark Abraham <[EMAIL PROTECTED]> wrote: > > > I installed ffamber ports for gromacs, generated gro and topology > > files for a DNA structure with pdb2gmx, a box with editconf and added > > solvation with genbox. When I try to run grompp i obtain these errors: > > > > > > checking input for internal consistency... > > calling cpp -traditional... > > processing topology... > > Generated 2628 of the 2628 non-bonded parameter combinations > > Generating 1-4 interactions: fudge = 0.5 > > Generated 2628 of the 2628 1-4 parameter combinations > > ERROR 0 [file "gr_Nast.top", line 761]: > > No default Bond types > > ERROR 0 [file "gr_Nast.top", line 3352]: > > No default Angle types > > ERROR 0 [file "gr_Nast.top", line 3354]: > > No default Angle types > > > > It seems gromacs don't read ffamber* force field information, however > > i using the directive > > > > include = -I\home\jantonioms\Programs\gromacs\share\gromacs\top > > > > in *.mdp file > > > > Can anyone have an idea? > > I don't know if it is the cause of the problem, but backslashes are not > usually interpreted as directory & file separators on Unix - unlike > Windows. Use forward slashes. As a first guess, I'd say that cpp is > interpreting your include directive with the backslashes starting escape > sequences for funky meanings, hence failing to find ffamber. That assumes > you've put ffamber in that location, of course! :-) > > Mark > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php