I'd echo Justin's request for your *actual* commands. Computers are very
literal, and we'd rather have your original commands than something
that's clearly been filtered through your head. If the above reflects
your actual use of wildcards on the command line, that sounds like a
possible source of problems.
Mark
Of cause I didn't use those wildcards, but instead of the * I used
the name of the file xxx, so that for pdb2gmx it reads
~$: ../bin/pdb2gmx -f ./xxx.pdb -o ./out -p ./out -q ./out.pdb -n
./out -i ./out
In the meantime I've redone it several times and finally got some
input files for grompp and mdrun (next problems ahead, but I try to
solve them ;-) )
Jens
Hi Jens,
When some people have already donated their time to assist you and
then you figure it out on your own, I suggest that you consider
posting a description of the actual problem and the solution that you
found. It will enhance your chances of getting a timely reply to your
next problem.
Chris.
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