Behnoush Zare wrote:
Dear xavier,
Thank you for your reply bur I want to run md simulation with regarding
dihedral restraints on helices. According to the chris suggestion I should add
the dihedral values of the helices backbone to the .top file. My question is
about calculating of dihedral angles values. Any help would be appreciated.
If you're after canonical values for backbone dihedral angles in
helices, then you should check out some textbook material, or survey
some representative structures in the PDB and measure them there.
Mark
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