Hi all, I have three questions.
1)In order to get the rmsd distribution of all the conformations, I used g_rmsd. In the help menu, it is stated that g_rmsd compares the structure given by -s and compares it to the others which are given by -f option. Consequently, I can not get the rmsd between all pairs of conformations. how can I get the rmsd between all of the pairs? 2)How can I get the rmsd matrix? In manual, it is indicated that with option -m, you produce a matrix. However, with xv, I can not see the matrix exactly. 3)Is there any specific tool for plotting the histogram of the rmsd matrix? Thanks in advance Ozge Engin ================================= Computational Science & Engineering Koc University _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
