Hi all, I am trying to use *trjconv command for -pbc but POPC molecules are breaking when visualize in VMD. The commands used are grompp -f pr.mdp -c em_out.gro -p .top -n index.ndx -o out.tpr trjconv -f em_out.gro -s out.tpr -o trj_out.gro -pbc inbox or cluster or whole Thi trj_out.gro contain broken POPC molecules Pls suggest me what options I have to use for -pbc? or any addition option I have to use? Thanks in advance.......
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
