Hi, Thanks for the mail. Well, I am using a old version specifically, even though newer versions are available. It is quite confusing since the same file is being able to be read by other tools like gmxcheck. And it is while running by gmxcheck that I get the Magic number error Raghu
--- On Wed, 23/4/08, Mark Abraham <[EMAIL PROTECTED]> wrote: > From: Mark Abraham <[EMAIL PROTECTED]> > Subject: Re: [gmx-users] trjconv error > To: "Gromacs Users" <gmx-users@gromacs.org> > Date: Wednesday, 23 April, 2008, 11:44 AM > Ragothaman Yennamalli wrote: > > Hi, > > Sorry for not replying immediately. > > > > Gromacs ver 3.2.1 > > OS is Red hat enterprise 4 > > Initially I had tried reading the file from an > external hard disk and now I copied it to another system > and tried again. Still the same error. > > The reason why I was truncating was due to a magic > number error I got while reading the trajectory. > > "Fatal error: Magic Number Error in XTC file > (read 0, should be 1995)" > > So, I was truncating it at an earlier time from where > I didnt see any errors. > > Dunno. 3.2.1 is a very old version - you should be planning > your upgrade > to version 4 as soon as it's out, unless you need > compatibility for some > reason. > > Otherwise the only reason I can think that gmxdump might > succeed where > trjconv doesn't is that it isn't actually an XTC > file, but some other > format with an .xtc extension. > > Try to replicate your problem with a small simulation. If > you can, then > you probably have a real issue, but this is very unlikely. > If you can't > replicate it, then it seems you've probably mangled > something and we > can't help you. > > Mark > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search > before posting! > Please don't post (un)subscribe requests to the list. > Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php Bring your gang together. Do your thing. Find your favourite Yahoo! group at http://in.promos.yahoo.com/groups/ _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
