Quoting minnale <[EMAIL PROTECTED]>: > > Thanks Mark for your reply, > I wanted to ask you that, the link which I mentioned means opls-aa ff > specifially for lipids? > I wanted to use opls-ff for both protein and lipid , shall I follow the > procedure according to the link. > http://www.gromacs.org/pipermail/gmx-users/2006-September/023639.html > Thanks for your invaulable suggestion.
The procedure Chris posted at that link is so that one can use the Berger lipid parameters (available at Tieleman's site) compatible with OPLS-AA, which is used for the protein. Follow what he says in that message closely; there have also been more recent discussions about using that particular procedure if you have other questions or run into difficulty. -Justin ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
