Here are the answers to the questions: Did see the trajectory. Looks fine
Did start from different initial time frames, and thicker slabs, problem does not go away Yes, the simulation has run for ~ 80 ns. It is equilibrated Which log file ? What I reported was from the log file On Tue, Jun 10, 2008 at 3:30 PM, Peyman Yamin < [EMAIL PROTECTED]> wrote: > Have you seen the trajectory? Did you try to start from different frames? > Is > your system equilibrated? > check log file! > > Peyman > > > On Tuesday 10 June 2008 13:35, himanshu khandelia wrote: > > Hi, > > > > I am trying to calculate the density in a bilayer simulation: > > > > echo 27 | g_density -f lipiddrg.xtc -n all.ndx -s all.tpr -o head.xvg > > -sl 200 -b 40000 > > > > The system size is about 6.5 x 6.5 x 9.6 > > > > I get the following error, after g_density has read most of the > trajectory: > > > > *** glibc detected *** g_density: free(): invalid next size (fast): > > 0x0000000000877e70 *** > > > > Can anyone please point out what the problem might be? The same > > command works for other trajectories for me. > > > > Thank you > > > > -Himanshu > > MEMPHYS, SDU, Denmark. > > _______________________________________________ > > gmx-users mailing list gmx-users@gromacs.org > > http://www.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before > posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [EMAIL PROTECTED] > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > -- > Peyman Yamin > Lehrstuhl fuer Thermische Verfahrenstechnik > Universitaet Erlangen-Nuernberg > Egerlandstr. 3 > 91058 Erlangen > Phone: +49(0) - 9131 - 85 27671 > Mailto: [EMAIL PROTECTED] > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Maria G. Technical University of Denmark Copenhagen
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