> > > Am Samstag, 21. Juni 2008 schrieb ha salem: > > >>>> Dear users > > >>>> my gromacs is 3.3.3 my cpus are intel core2quad 2.4
Why don't you use Fedora's fftw & lam? I have been using Fedora's fftw & openmpi with Gromacs without any problems. Do you have some other processes running on your machines (especially makewhatis, updatedb, prelink)? If you have a lot of I/O then you end up with a lot of wasted CPU time. -- ------------------------------------------------------ Jussi Lehtola, FM, Tohtorikoulutettava Fysiikan laitos, Helsingin Yliopisto [EMAIL PROTECTED], p. 191 50673 ------------------------------------------------------ Mr. Jussi Lehtola, M. Sc., Doctoral Student Department of Physics, University of Helsinki, Finland [EMAIL PROTECTED] ------------------------------------------------------ _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
