Dear all, I hope van der waals and electrostatic scaling factors in the LIE equation (g_lie) are system dependent (Ref: DK Jones-hertzog et al. 1996). Any one please give me a suggestion to calculate Clj and Cqq (as per g_lie program) in my protein-ligand system. I used GROMOS96 43a2 force field (improved alkane dihedrals) with SPCE water molecules.
Thank you very much in advance. Sincerely, Burri
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