Hi users: Recently I run a simulation of a protein in DMSO with GROMACS 3.2.1. I make the analysis with GROMACS 3.3.2 and GROMACS 3.2.1 . When I do the sasa analysis I observe differences in the sasa values between the two versions. The total sasa seems to be same in the two graphs but the hydrophobic and hydrophilic looks very different (see attached pictures). What could be the problem? Which version will be the best for analysis?
Cheers, Anthony
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