David, I looked up the euqation for the Nose-Hoover thermostat and don't understand where lambda comes from and how to use the number of degreees of freedom to determine the heat flux of a group. Could you explain some more?
Thanks, Andy > I have been reading through the mailing list and have read some > discussion that heat flux can be indicated by the value of lambda. Can I > calculate the amount of heat flux from the lambda value? In principle yes. Look up the equation for the temperature coupling. You will need to know the number of degrees of freedom as printed in md.log file. > > Thanks, > Andy Shelley > > > ------------------------------------------------------------------------ > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- David. ________________________________________________________________________ David van der Spoel, PhD, Professor of Biology Dept. of Cell and Molecular Biology, Uppsala University. Husargatan 3, Box 596, 75124 Uppsala, Sweden phone: 46 18 471 4205 fax: 46 18 511 755 [EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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