Thanks a lot everybody for the replies... it has really saved a lot of time for me...:)
With Thanks, Vivek 2008/10/6 sobereva <[EMAIL PROTECTED]> > Hi > It's easy to find centroid of a bunch of residues in > VMD. > For example,you want to find centroid of residue 1 5 > 8. > First,you input "atomselect top {resid 1 5 8}" in > console of VMD,if "atomselect0" appear,then input > "measure center atomselect0 weight mass",coordinate of > centroid will display. > > For the second question,in VMD,when you pointing at an > atom,its coordinate will display in console. > If you want select an atom by specifying its > coordinate,in "Selected atoms" text box,you can input > coordinate range of atoms,e.g. "x>3 and x<4". > > -- Lu Tian > > > > Hi Everybody, > > adding a little to my question, can I view the > > co-ordinate of an atom by > > pointing at it using mouse or can I select an atom > > by specifying its > > co-ordinate only..? > > Does any of the tool in chimera, pymol, vmd is > > having such facility.? > > > > 2008/10/6 vivek sharma <[EMAIL PROTECTED]> > > > > > Hi there, > > > > > > This is the question out of gromacs..but I need it > > urgently.. and I hope > > > this is the only place where I can get such expert > > to solve my query... > > > while trying to restrict my MDRUN for a particular > > site of the protein > > > molecule I want to visualize the site and find out > > the centroid for the > > > particular site...... > > > > > > Is there any visualization tool that can do the > > same .. > > > I mean Is there any molecular visualization tool > > that can help in finding > > > out the ...centroid between a group of resuidues ? > > > > > > > > > With Thanks, > > > Vivek > > > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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