Hi all users, I just encountered a problem about the DNA model when I set the coordinate in the pdb file . It always shows very strange figure about the DNA model.
My pdb file is like this: ATOM 1 Ab1 DNA 1 0.051 0.575 0.516 1.0 0.0 ATOM 2 Tb1 DNA 1 0.191 0.159 2.344 1.0 0.0 ATOM 3 S1 DNA 1 1.280 2.365 6.568 1.0 0.0 ATOM 4 S2 DNA 1 1.280 -2.365 -6.568 1.0 0.0 ATOM 5 P1 DNA 1 2.186 -0.628 8.896 1.0 0.0 ATOM 6 P2 DNA 1 2.186 -0.628 -8.896 1.0 0.0 ATOM 7 S3 DNA 1 4.660 -1.947 6.704 1.0 0.0 ATOM 8 S4 DNA 1 4.660 1.947 -6.704 1.0 0.0 ATOM 9 Cb1 DNA 1 3.431 0.162 0.756 1.0 0.0 ATOM 10 Gb1 DNA 1 3.571 -1.249 1.989 1.0 0.0 ATOM 11 P3 DNA 1 5.556 -5.737 6.828 1.0 0.0 ATOM 12 P4 DNA 1 5.556 5.737 -6.828 1.0 0.0 ATOM 13 S5 DNA 1 8.040 -5.516 4.279 1.0 0.0 ATOM 14 S6 DNA 1 8.040 5.516 -4.279 1.0 0.0 ATOM 15 Gb2 DNA 1 6.811 -1.814 1.407 1.0 0.0 ATOM 16 Cb2 DNA 1 6.951 -0.319 0.764 1.0 0.0 ATOM 17 P5 DNA 1 8.936 -8.655 2.152 1.0 0.0 ATOM 18 P6 DNA 1 8.936 8.655 -2.152 1.0 0.0 ATOM 19 S7 DNA 1 11.42 6.978 0.220 1.0 0.0 ATOM 20 S8 DNA 1 11.42 -6.978 -0.220 1.0 0.0 ATOM 21 Tb2 DNA 1 10.191 -0.707 0.430 1.0 0.0 ATOM 22 Ab2 DNA 1 10.331 -2.237 -0.518 1.0 0.0 CONECT 1 3 CONECT 2 4 CONECT 3 1 5 CONECT 4 2 6 CONECT 5 3 7 CONECT 6 4 8 CONECT 7 5 9 11 CONECT 8 6 10 12 CONECT 9 7 CONECT 10 8 CONECT 11 7 13 CONECT 12 8 14 CONECT 13 11 15 17 CONECT 14 12 16 18 CONECT 15 13 CONECT 16 14 CONECT 17 13 19 CONECT 18 14 20 CONECT 19 17 21 CONECT 20 18 22 CONECT 21 19 CONECT 22 20 MASTER 0 0 0 0 0 0 0 0 22 0 22 0 END Can anyone of you tell me whether there is something wrong with my pdb file? Thank you. Yang _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
