Hi Tania, The boolean options to the gromacs programs are (usually) set using (e.g.) -mw | -nomw
Cheers, Tsjerk On Sat, Nov 8, 2008 at 5:00 AM, Mark Abraham <[EMAIL PROTECTED]> wrote: > Tatsiana Kirys wrote: >> >> Hi, >> >> i got strange results using g_rms. >> Does it by default uses mass weighting for superposition? I wrote my own >> script to calculate rmsd without mass weighting and it gives different >> results then using g_rms. If it uses mass weighting for superposition how >> not not use it? i tried select "-mw no", but it doesn't work. > > As always, g_rms -h explains some relevant issues here. > > Also, "it doesn't work" is also a useless description for helping us help > you. :-) > > Mark > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php