anirban polley wrote:
Hi,
I saw that average thickness can be measured by peak to peak distance
of a electron density graph. This electron density can be calculated by
g_density command. But g_density gives the average electron density of the
membrane. So, I can get the average thickness of the membrane by subtracting
peak to peak distance of the electron density graph.
But I want to see how the thickness of the membrane is fluctuating over
area. So, can you tell me how I can calculate the thickness of the
membrane.
Please see the message I just sent out, and have a look at the following link:
http://www.bevanlab.biochem.vt.edu/GridMAT-MD/
-Justin
Regards,
Anirban
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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