Dear Mohammed,
Thanks for your reply.
The .ITP file from the PRODRG server has saved as drg.itp and added "#include
"drg.itp"" line in the topology file.
still getting the same error.
Where should I save the drg.itp file in the present working directory or
share/top directory?
Thanks,
Aswathy
Dept. Biotechnology
Ext. 3108
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Today's Topics:
1. RE: IN4 molecule type error (Mohammed Kamal)
----------------------------------------------------------------------
Message: 1
Date: Sun, 1 Feb 2009 21:11:11 +1100
From: Mohammed Kamal <mohkam...@hotmail.com>
Subject: RE: [gmx-users] IN4 molecule type error
To: Gromacs <gmx-users@gromacs.org>
Message-ID: <bay118-w17cc364801c129280ea54ef4...@phx.gbl>
Content-Type: text/plain; charset="iso-8859-1"
You have to include the .itp file that you have obtained from PRODRG in the
topology file. Be sure that you have changed the extension of the .itp file
that you have obtained from the PRODRG server from .ITP to .itp!!
Mohammed
> Date: Fri, 30 Jan 2009 20:57:28 +0530
> From: aswat...@amritapuri.amrita.edu
> To: gmx-users@gromacs.org
> Subject: [gmx-users] IN4 molecule type error
>
> Dear Gromacs users,
>
> I am a new user of gromacs. I was trying the Enzyme- Drug complex tutorial
> for a test run and i have ended up with following error. Please try to help me
>
>
> creating statusfile for 1 node...
>
> Back Off! I just backed up mdout.mdp to ./#mdout.mdp.90#
> checking input for internal consistency...
> calling /usr/bin/cpp...
> TEST1/trp.top:12:9: error: #include expects "FILENAME" or <FILENAME>
> cpp exit code: 256
> Tried to execute: '/usr/bin/cpp -I/usr/local/gromacs/share/top -DFLEXIBLE
> TEST1/trp.top > gromppVEFM2b'
> The '/usr/bin/cpp' command is defined in the .mdp file
> processing topology...
> Generated 1284 of the 1485 non-bonded parameter combinations
> Excluding 3 bonded neighbours for Protein_A 1
> Cleaning up temporary file gromppVEFM2b
> Fatal error: No such moleculetype IN4
>
> Can you please tell me what could be the reason for this? Please help me.
>
> Thanks in advance,
>
> Aswathy
> Amrita School of Biotechnology
> Dept. Biotechnology
> Ext. 3108
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