Check the VMD list, you should find the script there.
On Feb 1, 2009, at 9:28 PM, Mark Abraham wrote:
nahren manuel wrote:
Dear Gromacs Users,
I have done PCA of my MD , I want to visually represent the motions
in terms of porcupine plots. I came across Dynamite (web server)
for this purpose. But it only considers 500 frames of the xtc file.
Is there any other way how i could generate porcupine plots based
on tools of GROMACS ?
I've never heard of such plots - perhaps you should look for
pointers wherever you came across them in the first place?
Users on this list might help with some nuts and bolts, but first
you need to make sure we can have access to useful information -
like URLs and algorithm descriptions.
Mark
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