On Fri, Feb 20, 2009 at 2:45 PM, nitu sharma <sharmanit...@gmail.com> wrote:
> Dear All, > > I have successfully insstalled gromacs on my 32 bit > i686 linux system but when I give the mdrun command for running gromacs on > my system the output is like this > > "mdrun: error while loading shared libraries: > /usr/local/gromacs/lib/libmd.so.5: cannot restore segment prot after reloc: > Permission denied." > This is most likely due to SElinux policies. Since you haven't mentioned the build of linux you are using, you can try the following: - As root, change "#setenforce 0" in ''/etc/selinux/config'' and reboot. However, if you are using Fedora, go to Administration->Security Level and Firewall. There, in the SELinux Tab, go to Compatibility and enable the checkbox for "Allow the use of shared libraries with Text Relocation". Then click ok. could you please let me know what exactly the problem is in my installtion > and what is the solution of this problem. > > Thank you very much for taking out your time for my consideration. > > Nitu Sharma > > Structural biology lab > School of life Sciences > Jawaherlal Nehru University > New Delhi, India. > > > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Graduate student Microfluidics Lab Dept. of Mechanical Engg. IIT Kharagpur
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