Dear Prasun, I think you can get the help of Chem 3D for fixing this problem. First you have to generate the topology with Chem 3D then get the gromacs format with PRODRG server of the same.
I hope it will help you, with regards anil On Mon, Mar 2, 2009 at 2:21 PM, prasun kumar <prasu...@gmail.com> wrote: > respected all > > I m tryin to generate a topology file for dimethylated lysine using PRODRG > server,but I found that its not working...........can you plz help me in > gettin some another servers or any method........... > > is it possible to change gromacs topology file to charmm topology file > thanx in advance > > PRASUN (ASHOKA) > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- (¨`•.•´¨) Always `•.¸(¨`•.•´¨) Keep (¨`•.•´¨)¸.•´ Smiling! `•.¸.•´ «•´`•.(*•.¸(`•.¸ ¸.•´)¸.•*).•´`•» «•´¨*•.¸¸. * ANIL *.¸¸.•*¨`•» «•´`•.(¸.•´(¸.•* *•.¸)`•.¸).•´`•» ANIL KUMAR (Research Associate) C/O Prof. S. Durani Bio-Organic Lab No - 336 (2nd Floor), Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai-400076 (INDIA) Ph. No.- +91-22-25764780 (Lab) - +91-22-25764168 (Lab) Mobile:- +91-9819638547 *********************************** Web:http://chemanil.googlepages.com/ *********************************** --------------------------------------------------------------------------- "Time is money and duty is God.....To rise in life , One must respect both !!!!!" ----------------------------------------------------------------------------
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