Dear users, I just started using GROMACS and have trouble figuring out an efficient way to compute the fraction of native contacts for a trajectory. I've checked available options such as g_mdmat, g_dist, g_hbond and g_mindist as well as previous posts, but still are not able to make a side-by-side comparison of the contacts of my reference protein structure with those of each frame in order to obtain the desired fraction.
I would appreciate any help on this matter, Camilo
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