Many thanks to Mr. Lemkul and Mr. Rodrigues, their solution was, as
they say, the ticket.
Ken
On Apr 3, 2009, at 1:57 PM, Justin A. Lemkul wrote:
KS Rotondi wrote:
All, I've looked at the site and cannot figure this out, so
apologies if this is a painful often seen question. I'm trying to
install dssp for use with do_dssp on an OSX.5 PPC system with the
following steps, in the dssp folder:
./DsspCompileCC
cd..
sudo mv dssp /usr/local
cd /usr/local/bin
sudo ln -s /usr/local/dssp/dsspcmbi
Having done that I can type dsspcmbi in a terminal and run the dssp
program. However, running do_dssp returns
-------------------------------------------------------
Program do_dssp, VERSION 4.0.4
Source code file: do_dssp.c, line: 422
Fatal error:
DSSP executable (/usr/local/bin/dssp) does not exist (use setenv
DSSP)
-------------------------------------------------------
My problem is compiling the dssp source does not return a 'dssp'
file, rather the 'dsspcmbi' executable, as advertised. I feel I'm
missing a minor last step and would appreciate any help.
Right, so rename the dsspcmbi executable dssp and move it /usr/local/
bin, nothing fancy. The other option is to export DSSP=/path/to/
your/dssp
-Justin
Thanks, Ken
Dr. K.S. Rotondi
Departments of Chemistry, BIochemistry and Molecular Biology
914G LGRT
The University of Massachusetts - Amherst
Amherst, MA 01003
"If there's a solution, why worry?, If there's no solution, why
worry?"
His Holiness, the Dalai Llama
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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