g_sorient returns the number of solvent molecules within a given distance range of a protein -- it may be what you are looking for.
Matt 2009/4/5 Morteza Khabiri <khab...@greentech.cz>: > Dear gmxusers > > I want to calculate the density of solvent around protein. > I already tried the commands g_density and g_densmap but the results are > not the the things that I want. The g_density Compute partial densities > across the box and g_densmap just give me one black and white photo which > don't have sense. Is it possible to compute the number of density with > other commands of gromacs? > > Before thanks > > Morteza > > _______________________________________________ > gmx-users mailing list gmx-us...@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
