First thanks Matt to reply me for my problem. As I say I want to calculate the density of solvent around protein. I already tried the commands g_density and g_densmap The g_density Compute partial densities across the box and g_densmap just give me one black and white photo which don't have sense. Is it possible to compute the number of density with other commands of gromacs? Matt suggest me g_sorient but anyway it just give me total information about the solvent orientation like in box......The actual things that I want is that I want to know the density of water in each part of the protein..... I will be happy if you give me more suggestions.
Before thanks Morteza _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
