nam kim wrote:
I have segmentation fault error while running mdrun_mpi( gromacs 4.0.4).
I have installed gromacs 4.0.4 two month ago and been working fine.
Today, I just got Segment errors. Rebooting does not much help.
Here is log:
[rd:06790] *** Process received signal ***
[d:06790] Signal: Segmentation fault (11)
[rd:06790] Signal code: (128)
[rd:06790] Failing at address: (nil)
[rd:06790] [ 0] /lib64/tls/libpthread.so.0 [0x36bc30c430]
[rd:06790] [ 1] /lib64/ld-linux-x86-64.so.2 [0x36bb607496]
[rd:06790] [ 2] /lib64/ld-linux-x86-64.so.2 [0x36bb60789e]
[rd:06790] [ 3] /lib64/ld-linux-x86-64.so.2 [0x36bb60a68a]
[rd:06790] [ 4] /lib64/ld-linux-x86-64.so.2 [0x36bb60a552]
[rd:06790] [ 5]
/usr/local/topspin/lib64/libvapi.so(vipul_cleanup+0x50) [0x2a984472b0]
[rd:06790] [ 6] /usr/local/topspin/lib64/libvapi.so [0x2a98440c32]
[rd:06790] *** End of error message ***
Are there any other messages from mdrun? Anything printed to the screen (LINCS
warnings, etc)?
-Justin
Thanks
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
========================================
Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
