Dear gmx-users, When I viewed the md trajactory (*.trr) of oil/water/oil system using VMD, I found the trajactories are abnormal and as if there were forces on the molecules. However, these molecules are very far. The whole simulation is normal. How to solve this problem and obtain the normal trajactory moving? By the way, when I deal with *.gro, I used this command editconf -f test.pdb -o test.gro -c in order to make oil/water/oil system not turn into oil/water system. I do not know whether it effects the following viewing trajactory moving. I hope for your help. Thank you very much! H.Y. Xiao
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
