Antonia V. wrote:
Hi,

I just put one box on top of the other in order to make my new system.
I use no constraints for the system, and I can't figure out the problem. It seems that the water molecules of the new system are getting crazy...

Unfortunately, "on top" is also not a helpful description. Superimposing the boxes would probably lead to a garbage result. Placing two different boxes alongside each other to form a larger box should probably be reasonable if the force field can deal with the interfaces that are created.

Mark
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