First step, define what you mean by being "DOCKed".
Second step, determine if those conditions are meet by your protein and ligand. Catch ya, Dr. Dallas Warren Department of Pharmaceutical Biology and Pharmacology Pharmacy and Pharmaceutical Sciences, Monash University 381 Royal Parade, Parkville VIC 3010 dallas.war...@pharm.monash.edu.au +61 3 9903 9167 --------------------------------- When the only tool you own is a hammer, every problem begins to resemble a nail. From: gmx-users-boun...@gromacs.org [mailto:gmx-users-boun...@gromacs.org] On Behalf Of Chih-Ying Lin Sent: Tuesday, 12 May 2009 7:37 AM To: gmx-users@gromacs.org Subject: [gmx-users] Protein-Ligand Docking? HI When i visualize the MD trajectory, the protein and ligand are closed by. But, I don't know if ligand really DOCK on the protein. Please tell me how to define the successful docking. Thank you Lin
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