The Gromacs tutorial is a good place for us who is stating. Another place is the Gromacs wiki which has a beginner section ( http://wiki.gromacs.org/index.php/Beginners). In this local, it's possible you to see some videos.
I suggest for you read the online manual where has the flow chart and get started sections ( http://www.gromacs.org/component/option,com_wrapper/Itemid,192/). Regards, -- Rodrigo Antonio Faccioli Ph.D Student in Electrical Engineering University of Sao Paulo - USP Engineering School of Sao Carlos - EESC Department of Electrical Engineering - SEL Intelligent System in Structure Bioinformatics http://laips.sel.eesc.usp.br Phone: 55 (16) 3373-9366 Ext 229 Curriculum Lattes - http://lattes.cnpq.br/1025157978990218 On Wed, May 13, 2009 at 7:24 PM, Joseph Johnson <helstr...@hotmail.com>wrote: > Are there any good tutorials that start from the very beginning, like > assuming you only have a .pdb file? It seems that most of the tutorials > I've found have already generated the files you need and then all you have > to do is punch in some commands. Where can I learn to actually write the > molecular dynamics input file and all that good stuff? > > Thanks for your time and help, > Casey > > ------------------------------ > Windows Live™: Keep your life in sync. Check it > out.<http://windowslive.com/explore?ocid=TXT_TAGLM_BR_life_in_synch_052009> > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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