Bhanu wrote:
Dear Justin, could you please write what environmental changes you
made to MPICC.. I tried to alter the profile, but it is rejecting all
of them..
mpicc is only one theory for the problem, as I explain deep in the
thread Justin linked. Try configuring without --enable-mpi to test
Justin's theory. You providing us with more information about your
system and OS would help us diagnose.
Also, you should spend your time installing the latest GROMACS, not one
from months ago.
Mark
On 20/05/2009, Bhanu <bhanui...@gmail.com> wrote:
Thanks Justin, will try your suggestion..
2009/5/20 Justin A. Lemkul <jalem...@vt.edu>:
Bhanu wrote:
I tried to install Gromacs on my Core2Quad pc with the command
./configure --enable-mpi --disable-nice --program-suffix="_mpi"
it is showing the following error result:
[sand...@bhanu gromacs-4.0.3]$ ./configure --enable-mpi --disable-nice
--program
-suffix="_mpi"
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/bin/sh: /home/sandaka/Desktop/all: No such file or directory
configure: WARNING: `missing' script is too old or missing
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking for cc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking dependency style of cc... gcc3
checking for mpxlc... no
checking for mpicc... mpicc
checking whether the MPI cc command works... yes
checking for catamount... no
checking how to run the C preprocessor... mpicc -E
checking whether mpicc accepts -O3... yes
checking whether mpicc accepts -funroll-all-loops... yes
checking whether mpicc accepts -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -funroll-all-loops... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for int... yes
checking size of int... configure: error: cannot compute sizeof (int)
See `config.log' for more details.
Am attaching the config.log file herein. I've Openmpi and fftw already
installed and in the path.. Couldn't understand what is the error!
Have a look at this thread:
http://www.gromacs.org/pipermail/gmx-users/2008-November/037935.html
-Justin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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