Thamu wrote:
Hi gmx-users,
I am a new user of gromacs. I am trying to simulate a protein with cofactor
Acetyl-CoA.
I have generated gromacs topology for cofactor using prodrg server. I used
OPLS-AA force field.
I got the error message " Fatal error: Atomtype OA not found.
PRODRG generates Gromos-compatible force field parameters, not OPLS.
-Justin
I couldn't fix this problem. Could any one suggest me how to fix this problem.
Thanks in advance,
Yours sincerely,
S. Thamotharan
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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