jayant james wrote:
Hi!
Thanks for your reply. So I suppose I need to have a hostfile in my directory and call it during the mpirun command. I have one clarification, since I am using a quad core how am I to list the processors on the host file? would it need to open a file name \d hostfile and have a list for example like some thing below?
processor1
processor 2
processor 3
processor 4

or is getting to the hostfile an automated process (i.e.,) results from executing a program? I just put a search for host file and saw a folder by that name in the directory below
~/software/open-mpi-1.2.8/orte/mca/rds/hostfile

This is a GROMACS mailing list, not a how-to-configure-your-MPI list :-) Read its documentation!

Mark
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