Try using trjconv. Look at the -pbc options and also maybe -center options. --Omer.
Koby Levy research group, Weizmann Institute of Science. FAX: 972-77-444-7905 http://www.weizmann.ac.il/sb/faculty_pages/Levy/ On Wed, Jul 15, 2009 at 10:09, nikhil damle <pdnik...@yahoo.co.in> wrote: > but peptide remains inside the box while protein is seen outside. >
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