abhijit kayal wrote:
Hi
As you said I generated a pdb file of n-butane in PRODRG . I am
executing following command.
pdb2gmx -f ALA.pdb -p ALA.top -o ALA.gro
It is successfully working on amino acid residue.
But when i am executing for butane.
pdb2gmx -f BUTANE.pdb -p BUTANE.top -o BUTANE.gro
Fatal error:
Residue 'DRG' not found in residue topology database
It is showing above errors.Please help me out on this.
Most errors have solutions that are either posted on the wiki site
(oldwiki.gromacs.org), or by searching the list archive:
http://oldwww.gromacs.org/swish-e/search/search2.php
For your error, the solution is found on the wiki:
http://oldwiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database
Please consult these resources before posting messages to the list.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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