abhijit kayal wrote:
Hi,
If I going to perform normal mode analysis of a protien molecule what are the changes have to be done in .mdp files

That's what the manual is for, as well as pertinent literature and textbooks describing the protocols.

-Justin

Abhijit Kayal
                                                                 IIT Delhi


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--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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