Then I believe you have problems with MPI. Before I experienced something alike on our old system - serial version worked OK but parallel one failed. The same issue was with CPMD by the way. Another programs worked fine. I didn't correct that problem...
On Thu, Aug 27, 2009 at 7:14 PM, Paymon Pirzadeh<ppirz...@ucalgary.ca> wrote: > Yes, > it works when it is run on one processor interactively! > > On Thu, 2009-08-27 at 09:23 +0300, Vitaly V. Chaban wrote: >> > I made a .tpr file for my md run without any problems (using the bottom >> > mdp file). My job submission script is also the same thing I used for >> > other jobs which had no problems. But now when I submit this .tpr file, >> > only an empty log file is generated! The qstat of the cluster shows that >> > the job is running, also the processors are 100% engaged while I have no >> > outputs! >> >> A standard guess: what about trying to run the single-processor job on >> the same cluster? Does it run OK? >> >> _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
