leila karami wrote:
I am using ffG43a1. in hdb file, there is only amino acids relating to
protein and no nucleic acid relating to dna. I post error message in
previous mail.
Then the answer is to use a different force field or to create the appropriate
.hdb entries. One typically sees the Amber force fields used for protein+DNA
systems.
-Justin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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