subarna thakur wrote:
Hello
I installed the dssp program for obtaining the secondary structure.I
used the dssp programm to analyze the secondary structure of the protein
after a MD simulation run. I got the out of the pogramm as m.dssp but I
want to know how do I represent the output of the dssp programm
graphically or how do I visualize the output of the dssp programm.
If you are using dssp as a standalone executable, you'll just get a text file
with some statistics. If you want the nice pictures you see in publications,
you have to use do_dssp, which acts as an interface to dssp, and can be used
with trajectories.
-Justin
regards
subarna
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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