Dear All, When I am loading the GROMACS trajectory in VMD, I cannot the evolution of the protein structure with time.
When I am creating pdb files from the trajectory at different time steps using the dump option, I do see changes in the protein structure with time. My final structure after the MD simulation is also a lot different that my start. However, when loading the trajectory, I do not see a gradual/drastic transition from the starting to the final conformation in VMD. Please suggest where am I going wrong. Thank you -- Aditi Borkar, Tata Institute of Fundamental Research, Mumbai. _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
