For VMD you first load a GRO (or pdb) file, and then XTC. The XTC file should contain _exactly_ the same number of atoms as the GRO file. Did you save the entire system in the XTC, or just a specific part of it? Omer.
Koby Levy research group, Weizmann Institute of Science. FAX: 972-77-444-7905 http://www.weizmann.ac.il/sb/faculty_pages/Levy/ On Fri, Oct 2, 2009 at 20:39, Paymon Pirzadeh <ppirz...@ucalgary.ca> wrote: > Hello, > I ran an NVT simulation from a minimized configuration. The simulation > ended normally and I have a final configuration as well. But, when I > load the initial coordinates and then I want to add data, which is the > xtc file, nothing happens! no frames are loaded. This is while the xtc > file has a reasonable size and when I load it individually in VMD, it > loads the exact number of frames it should (300 frames). Is something > wrong with my outputs or is there something with VMD. This is the second > system I have such a problem. > Regards, > > Payman > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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