Have you tried: echo 0 > zero trjconv bla bla bla < zero You could put more arguments in the file, for example - use the "-center" option, and then echo another 0 into the zero file. --Omer.
On Sun, Oct 4, 2009 at 18:22, ABEL Stephane 175950 <stephane.a...@cea.fr>wrote: > Dear GMX Users, > > echo 0 | /usr/pbs/bin/mpiexec /scratch/name/gromacs-4.0.5/bin/trjconv_mpi > -s Peptide_43A1_topol.tpr -f ./XTC/Whole_Traj_43A1.xtc -o > ./XTC/Whole_Traj_43A1noPBC.xtc -pbc mol -ur compact. With the selection 0 > ("System") > >
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