Hello all, I am running grommp which kind of goes "successfully" but I am a little concerned about the fact that one of the messages in the terminal says "opening aminoacids.dat file" and in another message says "OTHER: 2000 residues found." I guess this 2000 is refering to the 2000 water molecules in my system since I am using just pure water and the command line I am using is:
grompp -f waters.mdp -c waters2000_b.gro -p waters2000.top -o watersinput.tpr I did not specify an amino acid file and I am not sure where that statement "opening aminoacids.dat file" is coming from. Will this affect my run? Please help me out. Lum
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